BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB020D06SP1|AL427615
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig375 1148 0.0
>3x_Contig375
Length = 1974
Score = 1148 bits (561), Expect = 0.0
Identities = 813/925 (87%), Gaps = 2/925 (0%)
Strand = Plus / Minus
Query: 62 cgatcatgcacatnttccanacaanggggcttcgctgtgtcawatttyygaaacagatca 121
||||||||||||| ||||| |||| ||||||||||||||||| |||| |||||||||||
Sbjct: 1963 cgatcatgcacat-ttccagacaatggggcttcgctgtgtcatatttttgaaacagatca 1905
Query: 122 tycctggattcayacyggtyatgcacacatgtccacctycacttcttgagccctacttcc 181
| |||||||| | || ||| |||||||||||||||||| |||||||||||| ||||||||
Sbjct: 1904 ttcctggatttatactggttatgcacacatgtccaccttcacttcttgagctctacttcc 1845
Query: 182 aacagcccagtgttttgattycaatygtsaaacaacacatcagactacatgtgtctgaaa 241
|||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||
Sbjct: 1844 aacagctcagtgttttgatttcaattgtgaaacaacacatcagactacatgtgtctgaaa 1785
Query: 242 tygtggaagyaatcccagaayyccyccccaycgyaaagcyacaatcaaccaccaccccgg 301
| ||||||| |||| ||||| | ||| | || ||||| ||||| ||| | || | |||
Sbjct: 1784 ttgtggaagtaatctcagaattcttccctatcgtaaagctacaattaactatcatctcgg 1725
Query: 302 tyatcgaaycacyaycaasascctcagaaggagaatccaayccttatttacctaacacac 361
| |||||| ||| | ||| | ||| ||||||||||| ||| |||||||||||||| | ||
Sbjct: 1724 ttatcgaatcactatcaagagccttagaaggagaattcaatccttatttacctaatatac 1665
Query: 362 cacccccgtctttggatgtcttggaaaaasaccagycgaataasaaggytgycycaatca 421
| | || ||||||||| ||||||||| ||||| ||||||| |||| || | |||| |
Sbjct: 1664 tatctttgtttttggatgttttggaaaaagaccagtcgaataagaaggttgtctcaatta 1605
Query: 422 gaayaycgaagccattggcagccctyggaccacatccagaggaagacgcccasgccgtac 481
||| | |||| |||||| || | |||||||||| ||||||| | || || |||||
Sbjct: 1604 gaatattgaagtcattggtagtttttggaccacatctagaggaatatgctcacctcgtac 1545
Query: 482 ygccaaccaccacaaaaccaycggagtcyascccaggaaacccgaagaaggccgcaatca 541
|||||| | || ||||| | |||||| | | ||||||| |||||||||||||||||
Sbjct: 1544 tgccaactatcataaaactatcggagtttagctcaggaaatttgaagaaggccgcaatca 1485
Query: 542 ttaccayaggacgtcyatcgaaaaacgtcaacccaccagaaaygtcgcccaggattgtsc 601
|||| | |||||||| ||||||||| ||||| |||| ||||| |||| | |||||||| |
Sbjct: 1484 ttactataggacgtctatcgaaaaatgtcaatccactagaaatgtcgtctaggattgtgc 1425
Query: 602 aagccccagcaagastcccaaacacaccagaactcgagtacgtcaaagcaacaatgaaca 661
|||||| || |||| || ||| ||| |||||||||||||||| ||||||||||||||||
Sbjct: 1424 aagccctagtaagagtcttaaatacatcagaactcgagtacgtgaaagcaacaatgaaca 1365
Query: 662 cattaagtctacctcttccacaactcaacatcgattttactgtattcattccagttatca 721
|||||||| ||| |||| ||||||||| || ||||||||||||||||||||||||||||
Sbjct: 1364 cattaagtttacttcttttacaactcaatattgattttactgtattcattccagttatca 1305
Query: 722 ataaaactttagtcaaacagaacattcagcacacaatatacgaccgtttggttgccaaac 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 ataaaactttagtcaaacagaacattcagcacacaatatacgaccgtttggttgccaaac 1245
Query: 782 ttttgaataatgagccactaccgaccaaaattattattgataaagatttcgatttaccta 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 ttttgaataatgagccactaccgaccaaaattattattgataaagatttcgatttaccta 1185
Query: 842 ataaagaaatggacgatgtaaaggtagcttccaagaagcttcctgtcaaccaacttgtgc 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 ataaagaaatggacgatgtaaaggtagcttccaagaagcttcctgtcaaccaacttgtgc 1125
Query: 902 taaaaaatgcctgggattgtagtcaacaaagaacaaaggaggactggcaagagtggatta 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 taaaaaatgcctgggattgtagtcaacaaagaacaaaggaggactggcaagagtggatta 1065
Query: 962 gacggctatcaa-ttctttactcaa 985
|||||||||||| ||||||||||||
Sbjct: 1064 gacggctatcaatttctttactcaa 1040
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.717 1.34
Gapped
Lambda K H
1.42 0.717 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4648
Number of Sequences: 1807
Number of extensions: 4648
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.7 bits)
S1: 11 (23.0 bits)
S2: 49 (100.8 bits)